• Regular maintenance update:

    • Added a second set of examples under Vignette “Usage Examples”.
    • Updated project home page, minor updates to documentation.
    • Minor changes to Rmd files to prevent pandoc errors.
  • Regular maintenance update:

    • Updated project home page, minor updates to documentation.
  • Regular maintenance update:

    • Minor internal changes to ensure compatibility with dendextend v1.15.2.
    • Changed naming standard of report plots to increase Windows compatibility: file names of correlation plots and boxplots now use “_” rather than “:”.
  • Regular maintenance update:

    • Tested compatibility with taxize v1.0: OK
    • Added function retrieve_calanguize_genomes() to enable users to quickly retrieve the calanguize_genomes Perl script, which is useful for preparing data to be used with CALANGO
    • Removed input attribute url from function retrieve_data_files(). This does not break existing code - if url is passed it will just be ignored.
    • Updated package logo in all documentation.
  • Initial CRAN release: Provides a small number of user-facing functions to:

    • Perform sophisticated association analyses between annotation terms and quantitative genotypes/phenotypes
    • Generate a full analysis website containing that can be easily shared with collaborators or the wider research community.