Changelog

Source: NEWS.md

CALANGO 1.0.20

• Regular maintenance update:
  • Minor bug fix that resulted in occasional errors on Windows machines
    
  • Minor updates to documentation
  • Minor tweak to dependencies
  • Fixed problem that resulted in retrieve_calanguize_genomes() wiping out the target folder

CALANGO 1.0.14

• Regular maintenance update:
  • Updated documentation, added links to published paper.

CALANGO 1.0.13

• Regular maintenance update:
  • Fixed Vignette listing. Added examples page as a full vignette.

CALANGO 1.0.122022-09-18

• Regular maintenance update:

  • Added a second set of examples under Vignette “Usage Examples”.
  • Updated project home page, minor updates to documentation.
  • Minor changes to Rmd files to prevent pandoc errors.

CALANGO 1.0.102022-03-12

• Regular maintenance update:

  • Updated project home page, minor updates to documentation.

CALANGO 1.0.82021-12-13

• Regular maintenance update:

  • Minor internal changes to ensure compatibility with dendextend v1.15.2.
  • Changed naming standard of report plots to increase Windows compatibility: file names of correlation plots and boxplots now use “_” rather than “:”.

CALANGO 1.0.52021-09-02

• Regular maintenance update:

  • Tested compatibility with taxize v1.0: OK
  • Added function retrieve_calanguize_genomes() to enable users to quickly retrieve the calanguize_genomes Perl script, which is useful for preparing data to be used with CALANGO
  • Removed input attribute url from function retrieve_data_files(). This does not break existing code - if url is passed it will just be ignored.
  • Updated package logo in all documentation.

CALANGO 1.0.22021-07-07

• Initial CRAN release: Provides a small number of user-facing functions to:

  • Perform sophisticated association analyses between annotation terms and quantitative genotypes/phenotypes
  • Generate a full analysis website containing that can be easily shared with collaborators or the wider research community.